Microarray Related Publications from UTSW

Title	Authors	Link to the Article
Activation of Heat Shock and Antioxidant Responses by the Natural Product Celastrol: Transcriptional Signatures of a Thiol-targeted Molecule	Amy Trott,, James D. West,, Lada Klai, Sandy D. Westerheide, Richard B. Silverman, Richard I. Morimoto, and Kevin A. Morano	Mol Biol Cell
Molecular adaptations underlying susceptibility and resistance to social defeat in brain reward regions.	Krishnan V. Han MH. Graham DL. Berton O. Renthal W. Russo SJ. Laplant Q. Graham A. Lutter M. Lagace DC. Ghose S. Reister R. Tannous P. Green TA. Neve RL. Chakravarty S. Kumar A. Eisch AJ. Self DW. Lee FS. Tamminga CA. Cooper DC. Gershenfeld HK. Nestler EJ.	Cell
A genome-wide screen for promoter methylation in lung cancer identifies novel methylation markers for multiple malignancies.	Shames DS, Girard L, Gao B, Sato M, Lewis CM, Shivapurkar N, Jiang A, Perou CM, Kim YH, Pollack JR, Fong KM, Lam CL, Wong M, Shyr Y, Nanda R, Olopade OI, Gerald W, Euhus DM, Shay JW, Gazdar AF, Minna JD.	PloS Med.
Symbiotic Bacteria Direct Expression of an Intestinal Bactericidal Lectin	H. L. Cash, C. V. Whitham, C. L. Behrendt, L. V. Hooper
The post-menopausal ovary displays a unique pattern of steroidogenic enzyme expression	J. C. Havelock, W. E. Rainey, K. D. Bradshaw and B. R. Carr	Human Reproduction
Identification of autoantibody clusters that best predict lupus disease activity using glomerular proteome arrays	Q.-Z. Li, J. Zhou, A. E. Wandstrat, F. Carr-Johnson, V. Branch, D. R. Karp, C. Mohan, E. K. Wakeland and N. J. Olsen	Clinical and Experimental Immunology
MicroArray Quality Control (MAQC) project papers	FDA and others
A Tlr7 translocation accelerates systemic autoimmunity in murine lupus	Srividya Subramanian, Katalin Tus, Quan-Zhen Li, Andrew Wang, Xiang-Hong Tian, Jinchun Zhou, Chaoying Liang, Guy Bartov, Lisa D. McDaniel, Xin J. Zhou, Roger A. Schultz, and Edward K. Wakeland
Identification of Francisella tularensis Genes Affected by Iron Limitation	K. Deng, R. J. Blick, W. Liu, and E. J. Hansen	INFECTION AND IMMUNITY
PRISM/PRDM6, a Transcriptional Repressor That Promotes the Proliferative Gene Program in Smooth Muscle Cells	C. A. Davis, M. Haberland, M. A. Arnold, L. B. Sutherland, O. G. McDonald, J. A. Richardson, G. Childs, S. Harris, G. K. Owens, and E. N. Olson	MOLECULAR AND CELLULAR BIOLOGY
Transcriptional analysis of doxorubicin-induced cardiotoxicity	X. Yi, R. Bekeredjian, N. J. DeFilippis, Z. Siddiquee, E. Fernandez, and R. V. Shohet	Am J Physiol Heart Circ Physiol
Logic of the Yeast Metabolic Cycle: Temporal Compartmentalization of Cellular Processes	Benjamin P. Tu, Andrzej Kudlicki, Maga Rowicka, Steven L. McKnight*
Identification of autoantibody clusters that best predict lupus disease activity using glomerular proteome arrays	Quan Li Zhen, Chun Xie, Tianfu Wu, Meggan Mackay, Cynthia Aranow, Chaim Putterman and Chandra Mohan	J. Clin. Invest.
The lipopolysaccharide-triggered mesangial transcriptome: Evaluating the role of interferon regulatory factor-1	Yuyang Fu, Chun Xie1, Mei Yan, Quan Li, Jae Won Joh, Christopher Lu, and Chandra Mohan	Kidney International
Molecular responses of vascular smooth muscle cells to paclitaxel-eluting bioresorbable stent materials	Kytai Truong Nguyen, Nishat Shaikh, Debra Wawro, Sheng Zhang, Nathan D. Schwade, Robert C. Eberhart, Liping Tang	Journal of Biomedical Materials Research Part A
Molecular correlates of emotional learning using genetically selected rat lines	Zhang S, Amstein T, Shen J, Brush FR, Gershenfeld HK.	Genes, Brain and Behavior
Genomic Profiling of Neutrophil Transcripts in Asian Qigong Practitioners: A Pilot Study in Gene Regulation by Mind-Body Interaction	QUAN-ZHEN LI, Ph.D, M.D., PING LI, Ph.D., GABRIELA E. GARCIA M.D., RICHARD J. JOHNSON, M.D, and LILI FENG, M.D.	The Journal of Alternative and Complementry Medicine
In Vivo Transcriptional Response of Cardiac Endothelium to Lipopolysaccharide	J. Gregory Maresh, Huaxia Xu, Nan Jiang, Ralph V. Shohet	Arteriosclerosis Thrombosis, and Vascular Biology
The Orphan Nuclear Receptor NGFIB Regulates Transcription of 3 -Hydroxysteroid Dehydrogenase	Mary H. Bassett, Takashi Suzuki§, Hironobu Sasano, Carlie J. M. de Vries, Patricia T. Jimenez, Bruce R. Carr, and William E. Rainey
The temporal expression profile of Mycobacterium tuberculosis infection in mice	Adel M. Talaat, Rick Lyons, Susan T. Howard, and Stephen Albert Johnston
Regulation of gene expression and cocaine reward by CREB and FosB	Colleen A McClung & Eric J Nestler	Nature Neuroscience
Combined analysis of oligonucleotide microarray data from transgenic and knockout mice identifies direct SREBP target genes	Jay D. Horton, Nila A. Shah, Janet A. Warrington, Norma N. Anderson, Sahng Wook Park, Michael S. Brown, and Joseph L. Goldstein
RNA amplification and transcriptional profiling for analysis of stem cell populations	Teresa D. Gallardo, Robert E. Hammer, Daniel J. Garry	Genesis
Increased expression and no mutation of the Flap endonuclease (FEN1) gene in human lung cancer	Mitsuo Sato, Luc Girard, Ikuo Sekine, Noriaki Sunaga, Ruben D Ramirez, Craig Kamibayashi, John D Minna
A multitude of genes expressed solely in meiotic or postmeiotic spermatogenic cells offers a myriad of contraceptive targets	Nikolaus Schultz, F. Kent Hamra, and David L. Garbers
Identification of NF-kappa B regulated genes induced by TNF-alpha utilizing expression profiling and RNA interference	Anwu Zhou, Shane Scoggin, Richard B Gaynor, Noelle Sevilir Williams
Interferon and Granulopoiesis Signatures in Systemic Lupus Erythematosus Blood	Lynda Bennett, A. Karolina Palucka, Edsel Arce, Victoria Cantrell, Josef Borvak, Jacques Banchereau, and Virginia Pascual
Identification and Validation of Genes Involved in the Pathogenesis of Colorectal Cancer Using cDNA Microarrays and RNA Interference	Noelle Sevilir Williams, Richard B. Gaynor, Shane Scoggin, Udit Verma, Tunc Gokaslan, Clifford Simmang, Jason Fleming, Denise Tavana, Eugene Frenkel, and Carlos Becerra
Development of a Transgenic Green Fluorescent Protein Lineage Marker for Steroidogenic Factor 1	Nancy R. Stallings, Neil A. Hanley, Gregor Majdic, Liping Zhao, Marit Bakke, and Keith L. Parker
Transcriptional mapping and genomic analysis of the cardiac atria and ventricles	Xiao-Song Zhao, Teresa D. Gallardo, Ling Lin, Jeoffrey J. Schageman, and Ralph V. Shohet
DNA microarray analysis of differential gene expression in Borrelia burgdorferi, the Lyme disease spirochete	Andrew T. Revel, Adel M. Talaat, and Michael V. Norgard
MarC-V: a spreadsheet-based tool for analysis, normalization, and visualization of single cDNA microarray experiments.	Schageman JJ. Basit M. Gallardo TD. Garner HR. Shohet RV.	Biotechniques
The evolution of custom microarray manufacture	Garner, H.R.; Balog, R.P.; Luebke, K.J.;
The Hypocholesterolemic Agent LY295427 Reverses Suppression of Sterol Regulatory Element-binding Protein Processing Mediated by Oxysterols	Bethany A. Janowski, Bei Shan, and David W. Russell
Genomic DNA standards for gene expression profiling in Mycobacterium tuberculosis	Adel M. Talaat, Susan T. Howard, Walker Hale IV, Rick Lyons, Harold Garner, and Stephen Albert Johnston
Genome-directed primers for selective labeling of bacterial transcripts for DNA microarray analysis	Adel M. Talaat, Preston Hunter, Stephen Albert Johnston
Microarray technology -- enhanced versatility, persistent challenge	Charles B Epstein and Ronald A Butow	Current Opinion in Biotechnology
MAD: a suite of tools for microarray data management and processing	Birong Liao, Walker Hale, Charles B. Epstein, Ronald A. Butow, and Harold R. Garner

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